A poetic foray into digestion

Her stomach gurgles, her belly quivers,

Her eyes dart round, her body shivers,

Her blood is pumping, pupils dilating,

Her brain firing signals, neurons pulsating.

 

“I’m hungry” she says, stomping her feet,

Her hands curled in fists, her cheeks pink with heat,

Her blood sugars low, her brain senses the threat,

Hypoglycaemic, she’s getting upset.

 

Let’s zoom inside to her stomach, we see

Not much actually, it’s pretty empty,

Let’s go closer still to epithelial cells,

With mechanoreceptors that detect stretch and swell.

 

The cells are secreting, in the absence of food,

Ghrelin, director of hunger and mood.

It travels far to the hypothalamus,

And crosses the barrier to the Arcuate Nucleus.

 

It exerts on the brain orexigenic effects,

Acting on all of the CNS,

As well as controlling energy homeostasis,

It activates signals in other places.

 

It is involved in rewards and incentives,

Activating memory to be more retentive,

In the prefrontal cortex it alters decisions

And signals that food is the brains next mission.

 

AGRP / NPY neurons firing,

She suddenly realises she’s desiring

Foods that will bring comfort and energy,

Turning the hunger to satiety.

 

She glances around, “Is there food in the kitchen?”

“Maybe there’s cake?” she finds herself wishing.

Her brain screaming out “I need sugar and fat!”

“How about this celery stick?”, “No! Not that!”.

 

She settles for leftovers from todays’ lunch,

She prepares the meal and begins to munch,

But before the food even enters her mouth

Her body’s preparing to break it down.

 

The optic nerve signals, olfactory tasting,

Oesophagus contracting, stomach bracing,

Signals firing and cells releasing,

Hormones pumping, saliva secreting.

 

She’s chewing her food, or masticating,

The mechanical movement of teeth activating

Brain pathways and peptides although which? We don’t know,

Undoubtedly appetite suppressing, though.

 

She swallows the food, it enters her gullet,

Peristaltic contractions push it, pull it?

Down to the stomach and through the sphincter,

Exciting the vagus nerve which leads to

 

Acetylcholine release which then acts on

M3 receptors which has an impact on

G cells and Gastrin release which exacts on

Enterochromaffin cells, in fact, on

 

The release of Histamine which causes secretion

Of a Hydrochloric Acid solution

From parietal cells. This breaks down proteins:

Bacterial, viral, it effectively cleans.

 

The stomach defensive to outside threats,

It protects the body from microbe pests,

And starts to get bigger when filling with stuff

Alerting cells that there’s food, sure enough.

 

This is the sign that cells into action,

Satiety hormones promote food satisfaction,

And called to arms they summon their messengers

To zoom round the body, passing on messages.

 

Listen real close and we’ll hear what they’re saying,

Small peptides which act on receptors relaying

Instructions for organs and tissues together,

Discreetly directing digestion, they’re clever!

 

Quick shout out to the second brain,

Enteric Nervous System reigns

Independent of our head,

Taking over when we’re fed.

 

Not consciously controlling food,

But still it can impact on mood.

Example; it can play a role in

Emotion via serotonin.

 

We can’t leave out our microbe friends,

They influence our gut no end,

They breakdown fibre, control immunity,

Live symbiotically with impunity.

 

But more than this they also create

Peptides that mimic our own, although fake

They still can cause the brain to favour

Certain foods and change behaviour.

 

But we’re on a tangent, I transgress,

Trying to unravel the mysteries, the mess,

Let’s turn our attention back to her digestion,

Please excuse this wild digression.

 

The food moves into the small intestine,

Which triggers release of the hormone secretin,

Raising pH, deacidifying the chyme,

Preparing the food for absorption time.

 

Now this is when hormonal magic starts,

They spring into action to play their parts,

All working towards a common goal,

With the finest precision and expert control.

 

Introducing our trio of polypeptides,

Meet P.P, P.P.Y and greet N.P.Y,

Their function is slowing intestinal transit,

Collecting info from gut contents to transmit.

 

There’s cholecystokinin released from the lining

Of epithelial cells, the intestine mining

All of the nutrients. Hormones supplying

Pancreatic enzymes emulsifying.

 

Let’s move to the pancreas, it’s interesting here,

There are many cell types, but you don’t need to fear,

Insulin’s important and so’s glucagon!

Blood glucose levels is what they act on.

 

“Cells, uptake glucose!” ordered insulin.

Encouraged by supporters called incretins,

G.I.P and G.L.P-1 unite

To make sure secretion of insulin’s right.

 

Back to the intestine the food flowing through,

Down to the large one it ends up as poo,

But still there’s absorption before this occurs,

Gradient crossings and nutrient transfers.

 

Her hormones are doing their job quite well,

Signalling enough’s enough for a spell,

We’ll find, if we’re looking, there’s one in particular,

Not quite a satiety hormone, but similar.

 

That is super important in stopping eating,

It acts on the brain to minimise feeding,

Signalling high nutrition, or paucity,

Signalling also body adiposity.

 

It’s Leptin, of course, what else could it be?

Released from adipocytes, completely key.

Directly proportional to adipose stores,

It communicates well, but not without flaws.

 

For when we’re obese, sometimes we’re resistant

To leptins effects, and Ghrelins persistent,

The balance is off and it’s hard to make right

But for now she is healthy, her hormones alright.

 

The food almost finished her plate almost empty,

She’s eaten as much as she can, it was plenty,

She’s starting to feel just a little bit full,

“Delicious! But really I can’t eat it all!”

 

And after a while, digestion is done,

Nutrients absorbed, the waste passed on,

Deposited fat, glucose stores filled,

The body has protein with which to rebuild.

 

She’s feeling much better now that she has eaten,

Happy and comfy, a bit sleepy even,

She washes her dishes and lies on the sofa,

Sinking, so sweetly, into a food coma.

Why We’re Here – The Research

For those of you who have got the impression that so far my time in Ecuador has mostly been exploring, lying in a hammock and swimming, you’re wrong. Well, half wrong. Okay, just a little bit wrong, we have been doing a lot of that. But there’s a much more serious side to our life here: the research.

To preface the bulk of this post, I’ll just explain why I’m here: I’m 2 and a bit years into a degree in Biomedical Sciences with Industrial Placement at Manchester, and this is my placement. Heather is also on placement with me, she studies Zoology at Manchester and is a passionate animal lover, even the grizzly, scary, creepy ones… especially the grizzly, scary, creepy ones. Our aim over the course of this year in the Jungle is to complete research in an area of our choosing and produce scientifically viable results. If we work hard, then getting published could be on the cards.

We’ve both spent a long time coming up with a plan for our research proposals which mainly involved a lot of emailing, scrolling through PubMed, reading papers and chatting to Javier, the Ecuadorian station manager, about what would be possible. Javier has a degree in Forestry Engineering and has been working at the station for 6 years now. He’s affectionately nicknamed Jungle Dad and is sociable, generous, and a real joker. Even though most of his jokes are in Spanish and fly straight over our heads, he still makes us laugh with his faux-stern expressions, dad dancing and inability to say slept. “Slepech. Slepecha. Slepch?”

Heather’s main project will be investigating the Arachnid biodiversity here at Payamino. She was given a fantastic opportunity to work closely with an Arachnid specialist during her time here; they’ll complete the field work and research when he arrives at the station in January next year. ‘Arachnid Biodiversity Study’ means capturing as many spiders as possible, bringing them back to the station and identifying what species they are. Heather’s hoping to gain a greater appreciation of an animal that’s normally shunned in society and has a huge fear stigma attached to them. In her opinion, they’re actually underappreciated, beautiful creatures that aren’t nearly as scary as they seem. Already we’ve seen lots of spiders, including a baby tarantula (that we caught in a soup bowl) and many jumping spiders. Heather uses the word adorable, not something synonymous with spiders in my personal opinion, but it’s her project not mine. It’s a good thing I’m not scared of spiders (which my mother proudly attributes all credit to herself as she always made me and my sister get rid of the spiders in the house so she didn’t have to, thanks mum). Also, Heather will be continuing with the research on Heliconias, a native flowering plant, which was started by a previous placement student. The project is looking at the effects of genetic variation in Heliconia species and the associated insect communities. It will involve cutting off roots from existing plants and growing her own little, genetically-identical garden, then measuring the species diversity found between the two plants. Interesting stuff, plus Heliconias are really pretty.

My projects, which I’m very excited about, will be Fungi Biodiversity and knowledge about ethno-medicine in indigenous communities. Fungi are a largely under-researched, under-appreciated group of organisms. They are neither a plant nor an animal, but a whole kingdom to themselves. My project will be on the different types of flowering fungi found in Payamino. It will be impossible to do an all-inclusive biodiversity survey as a lot of fungal species are microscopic and I just don’t have the equipment to find them, so the project will be limited to fungi I can see with my eyes. There has been absolutely zero research into fungi biodiversity here, so I’m in unchartered territory and hopefully my research will be valuable to the scientific community. Once I’ve collected data on each fungi I find, I will get in touch with a fungi specialist either in Quito or the UK who can help me identify each species. Hopefully I’ll develop a comprehensive list of species found in this area. My interest in fungi started to develop in first year of Uni when I came to appreciate how diverse, interesting and spectacular they can be. For example, did you know that some species of fungi create their own jets of air in order to spread their spores further; some species are carnivorous, capable of punching holes in the cell walls of passing nematode worms and insects for food; and some have even teamed up with plants they live on and kill the insects for them then feed them the corpses. I started to see them as the research underdog of the natural world, and love the idea of contributing to this hugely unfinished puzzle piece of nature.

My second research project is quite close to my heart. I’ve always been interested in alternative medicine and how they practice medicine in different parts of the world, inspired by my own battle with illness, and had the idea of looking into medicine used in the indigenous communities here before I even applied for the placement. When I arrived, I found a book on the book shelf entitled ‘Plantas de Medicinales en Payamino’. I’m sure you can crack that Spanish on your own. The book was a catalogue of all the different plants used medicinally by the Kichua community, what they’re used for and how they’re prepared. I got in touch with the author of the book, Dr Brian Doyle – a researcher in the States, asking if there was any further research he wanted to do here, and if not, whether his research bought up some interesting questions that I could research myself. He replied with 3 large bullet points, each detailing a possible research area I could pursue, and said he was planning on coming back to Payamino next year to continue his research. This was the best possible news I could have hoped for. Bullet point number 1 turned out to be not so relevant after chatting with Javier who knows the area and communities really well. Bullet point number 2 was simply monitoring all the plant species year round; collecting samples for the National Herbarium in Quito and collecting data and pictures about the life cycle of each plant. Bullet point number 3 was by far the most interesting and challenging suggestion. Brian had recently published a paper that analysed the distribution of knowledge about traditional medicine across the community near the station. His suggestion was that I do the same thing, with improvements and a few alterations, in a few other indigenous communities, and use the data to compare knowledge between communities. Imagine: travelling to various indigenous communities in the rainforest, staying for a week or so and in that time surveying a random sample of the population using images of plants and a basic questionnaire. Queue huge excitement and the stomach-dropping realisation that I’m going to have to be near fluent in Spanish to pull this off. So at the moment I am doing my best to learn Spanish, with a general plan to do this field work next Easter.

So my plan is to get a chunk of the Fungi project done by Christmas and send over the data to a specialist to see what results I get; and learn Spanish rapido. There’s only so far you can get with audio-tapes, books and Duolingo, so Heather and I spent an intense week in el Coca having Spanish lessons with an Ecuadorian-but-lived-in-Norway-for-18-years English teacher, Fernando, doing 4 hours of lessons a day. It was a pretty hard week but we learnt a lot. On the Friday, we went to a bar (Papa Dance, a salsa bar on the river) with Fernando and met some of his other students learning English and found we could actually have a simple conversation and swap basic information about our lives. It was a triumphant moment.

The pace of life is still quite slow here as we travel to and from various cities on a weekly basis to get all the relevant documentation needed for our contracts with UEA and our Ecuadorian work visa, and as we adjust to the living conditions in the Rainforest. We’ve only been here a month but it already feels like a lifetime. This little clearing on the bank of el Rio Payamino has become our home and we love it. We both have high hopes for our research here and can’t wait to see our ideas and plans come to fruition. Let’s hope that in a year’s time, Heather and I can look back at the blog post and have succeeded in meeting our aims. Buena suerte a nosotros. Good luck to us.

C-section babies 40% more likely to develop Asthma

According to a Danish study, babies born via C-section are more likely to be hospitalised more frequently and develop immune disorders such as asthma, allergies and diabetes.

The exact cause of this isn’t clear, and the operation itself is not likely to be the direct cause of these effects, so what could it be?

Recent research has shown the essential role that our gut flora play when it comes to our physiology and even behaviour. Our gut has been dubbed our ‘Second brain’ and this term could be a lot truer than we currently know. During vaginal birth, the baby picks up the bacteria present in the vaginal canal which is the first bacteria the baby comes into contact with.

The second lot of bacteria babies are exposed to are in breast milk. It’s vitally important to breast feed (if you can), and not to rely on formula (if you have the choice – I understand that breast feeding isn’t an option for a lot of women); non-breast fed babies are more likely to have frequent infections and childhood obesity. There are also increased risks for mothers who don’t breast feed like post natal depression and a higher risk of some diseases.

The combination of vaginal and breast milk bacteria sets up the foundation of the ecosystem living within our bodies and determines the bacterial species likely to take up residence within us.

This could be a possible explanation for why babies born by caesarean have decreased immune function in later life.

Our gut flora plays a role in breaking down food, modulating the immune system, protecting against pathogens and maintaining the gut mucosal lining. We have evolved with these species and rely on them for a lot of functions that our own bodies can’t perform. Research has shown that they also play a role in modulating behaviour and mood. It seems that sayings we’ve used for years: ‘gut feeling’, ‘following your gut’ etc. could be more accurate than we previously thought. The complex arrangement of signalling neurons that make up our enteric nervous system links the gut very closely to the brain, hence why we ‘feel’ emotions in our stomachs.

I understand that motherhood and birth are very personal, very sensitive issues; and the aim of my post is only to make people aware and to educate. To any expecting mothers, congratulations and I wish you all the best. And to all current mothers, you’re all amazing, you don’t get told it enough but you are.

The promiscuity gene

Whether we are likely to cheat or not is (partly) written in our genes.

The media promotes sexual promiscuity and freedom as empowering and contemporary, however it turns out that people can be either monogomous or polygamous. Alot of people will fall into one of the two categories; either you form deep attachments to people and prefer just one person, or you enjoy the freedom to be with whoever you want and get a thrill out of multiple sexual partners.

Time to shrug off the guilt and see through the misconceptions about what you should or shouldn’t be doing. This works both ways! If your monogomous but single, you may feel pressured by the media to explore your sexuality and enjoy multiple partners. Moreover if you’re polygamous, you may feel labelled or branded as someone who sleeps around or is anti-commitment. There’s no winning!

Or is there? I think the only way to truly win in situations like this is to be your self, and to be honest about how you feel with other people to decrease the likelihood of those around you getting hurt! That comes after deciding to feel proud and content with who you are, and maybe after reading this article, you’ll feel more ready to be your true self.

Oxytocin (in women) and vasopressin (in men) are the hormones which enable you to bond and to feel attached and close to people around you. Recent research has shown that there are different versions of these genes which contribute to your phenotype (observable characteristics of a gene). If you’re more monogamous, then these hormones are released in response to interactions with your partner encouraging feelings of closeness and bonding, and the receptors are more frequent and located near dopamine receptors which trigger the reward pathway making you more likely to go back for more. However if you’re more polygamous, then you get less oxytocin/vasopressin release and don’t get the same reward pathway stimulus, leaving you looking elsewhere for the hit.

A study from the University of Queensland shows that our genes are only partly to do with whether we’re more likely to cheat on a partner; there are so many environmental and emotional factors which also play a part. In this study, they tested the correlation between cheating partners and their genes, and they found that genes linked to infidelity were present in 65% of cases of men who cheated in past relationships, but only present in 40% of women; showing that men are more at mercy to their genotype than women.

I think they key is to embrace who you are; and be honest about who you are to yourself and to others in the kindest way. Actually quite a hard and courageous thing to do, I’ve found.

So the picture with this article is me at a full moon party on Koh Phangyan in Thailand a couple of years ago! I try and only use my own pictures on my blog, and this was the closest I could find that has anything to do with being promiscuous haha – even though it’s just a picture of me dancing! Below me pulling a funny face is my aussie friend Zan.

Power and responsibility – the CRISPR debate

To edit or not to edit? Science is making major advances by the second, and with all this new-found power and knowledge comes responsibility, but where do we draw the line? As with subjects like Law and Philosophy, science is having to answer a difficult question along a very thin line; and us black and white, right or wrong scientists are going to have a pretty hard time finding a universal, one-fits-all solution that we strive so hard to achieve in our research.

CRISPR, a gene-editing tool, has opened up many doors for scientists, inside and outside of the lab, and is a revolutionary new way to explore life, and change it. It’s a technique used by bacteria to edit DNA. Now that we have sequenced the human genome, we can edit in or out any gene that we want, thus enabling us to change life at its core. For those with little scientific knowledge: a gene codes for a protein. A gene is made up of DNA, which is transcribed into RNA, which is translated into a protein. Everything in our body is made up of proteins; our hair, skin, blood, heart.. everything. So with the power to alter genes, we can change anything in the human body.

The science bit

CRISPR was first discovered in the immune systems of bacteria to fight infections.

Surprisingly, bacteria get infections too by even smaller organisms called bacteriophages. Bacteriophages to Bacteria, are viruses to people.

Bacteriophage inject small sections of DNA into its host bacteria in order to recruit the mechanisms present in bacteria in order to make new proteins for the bacteriophage, eventually killing the bacteria, and enabling the bacteriophage to reproduce.

40% of bacteria (and 90% of archaea) have a specific defence mechanism against bacteriophage that allow them to target foreign DNA inside the bacterial cell and cut it so it’s unusable.

This is CRISPR.

The bacteria incorporate the foreign DNA (injected by the bacteriophage) into their own DNA, in between genes that code for enzymes and proteins that are used to target and kill foreign DNA.

This section of DNA is called Clusters of Regularly Interspaced Palindromic Repeats (hence CRISPR).

One of these genes codes for an enzyme called cas9 which is used to cut DNA.

The inserted foreign DNA is transcribed into RNA (which can be used as a complimentary code for DNA) which pairs up with cas9 to form an RNA-enzyme complex.

The RNA finds the DNA it codes for (the foreign, harmful DNA) and cas9 cuts it up. It’s the perfect team. So now scientists are able to extract the cas9 enzyme, and pair it with any RNA sequence they like, thus being able to target any gene they know the sequence of (most genes) and cut it.

The DNA will automatically try to fix itself by activating the repair pathway which will result in mistakes and ultimately silence or disrupt the gene, making it redundant.

Taking this one step further, if you inject the correct, functional sequence of a gene you want to replace it with (making sure it has complementary ends to the cut section of DNA) the repair pathway will incorporate this new gene into the DNA. 

Back to normal

The practical application of this with regards to people, is that we now have a relatively easy and cheap way of altering DNA. We can replace a faulty gene with a new gene of our choosing. Absolutely fantastic when it comes to hereditary diseases caused by the mutation of a single protein, such as Huntington’s Disease (a mutant version of the protein Huntingtin causes brain damage in the areas that control movement, thinking and motivation) and Cystic Fibrosis (a sufferer has to have inherited a faulty gene from both parents because the cause of symptoms is a lack of function of a particular protein that acts as an ion channel. If one normal gene is present, the functional protein is produced and symptoms are not seen, this person would be a carrier). The potential is incredible and is limited only by our knowledge of genes and their function.

At present, all of this is only possible in embryos as they are a single cell. Once the embryo starts dividing exponentially to become a whole organism, we no longer have the technology to insert CRISPR into every cell. So the only way this technology works is by changing the DNA of an embryo before its even a person. Making the choice on behalf of a potential human being. Having the technology to edit out or in ANY protein of your choosing. Choosing a gender. Choosing hair and eye colour. Curing a disease. Making a mistake and causing a new disease. Producing unknown and unwanted consequences.

Enter: the Medical Ethics society, Religious groups, Scientists, Feminists, Lawyers, Parents, Human Rights Activists, Politicians and anyone else who’s interested.

Go.

It’s an awfully big debate with a million right answers. And the scary thing is that every time an answer gets decided and a line drawn, it will become obsolete with every new discovery. In the future we may have the technology to edit genes in adults. Do we draw the line before mental illness and anxiety disorders? Do children decide their own fate? Do we use this technology to enhance normal people?

I’ll repeat a point I made at the start of this article: with great power, comes great responsibility. Who’s given scientists the right to play God? Food for thought.